Bioinformatics & Computational Biology

Movement: a Python toolbox for analysing motion tracking data

K.4.601
Niko Sirmpilatze
<p>The study of animal behaviour has been transformed by the increasing use of machine learning-based tools, such as DeepLabCut and SLEAP, which can track the positions of animals and their body parts from video footage. However, there is currently no user-friendly, general-purpose solution for processing and analysing the motion tracks generated by these tools. To address this gap, we are developing movement, an open-source Python package that provides a unified interface for analysing motion tracking data from multiple formats. Initially, movement prioritised implementing methods for data cleaning and kinematic analysis. We are now focusing on expanding its data visualization capabilities and on developing metrics to analyze how animals interact with each other and with their environment. Future plans include adding modules for specialised applications such as pupillometry and collective behaviour, as well as supporting integration with neurophysiological data analysis tools. Importantly, movement is designed to cater to researchers with varying levels of coding expertise and computational resources, featuring an intuitive graphical user interface. Furthermore, the project is committed to transparency, with dedicated engineers collaborating with a global community of contributors to ensure its long-term sustainability. We invite feedback from the community to help shape movement's future as a comprehensive toolbox for analysing animal behaviour. For more information, please visit <a href="https://movement.neuroinformatics.dev/latest/index.html">movement.neuroinformatics.dev</a>.</p>

Additional information

Live Stream https://live.fosdem.org/watch/k4601
Type devroom
Language English

More sessions

1/31/26
Bioinformatics & Computational Biology
K.4.601
<p>Nextflow is a workflow manager that enables scalable and reproducible workflows. Nextflow is complemented by the nf-core community effort that aims at developing and supporting a curated collection of Nextflow pipelines, developed according to a well-defined standard, and their components. Since its inception, nf-core has set rigorous standards for documentation, testing, versioning and packaging of workflows, ensuring that pipelines can be "run anywhere" with confidence.</p> <p>In order to ...
1/31/26
Bioinformatics & Computational Biology
K.4.601
<p>Modern research workflows are often fragmented, requiring scientists to navigate a complex path from the lab bench to computational analysis. The journey typically involves documenting experiments in an electronic lab notebook and then manually transferring data to a separate computational platform for analysis. This process creates inefficiencies, introduces errors, and complicates provenance tracking. To address this challenge, we have developed a tight, two-way integration between two ...
1/31/26
Bioinformatics & Computational Biology
László Kupcsik
K.4.601
<p>I will share how adopting <a href="https://nixos.org/">Nix</a> transformed my bioinformatics practice, turning fragile, environment‑dependent pipelines into reliable, reproducible workflows. I will walk the audience through the practical challenges of traditional Docker‑centric setups, introduce the core concepts of Nix and its package collection (nixpkgs), and explain how tools such as <a href="https://docs.ropensci.org/rix/">rix</a> and <a ...
1/31/26
Bioinformatics & Computational Biology
Jose Espinosa-Carrasco
K.4.601
<p>The release of AlphaFold2 paved the way for a new generation of prediction tools for studying unknown proteomes. These tools enable highly accurate protein structure predictions by leveraging advances in deep learning. However, their implementation can pose technical challenges for users, who must navigate a complex landscape of dependencies and large reference databases. Providing the community with a standardized workflow framework to run these tools could ease adoption.</p> <p>Thanks to ...
1/31/26
Bioinformatics & Computational Biology
Aurélien Luciani
K.4.601
<p><strong>ProtVista</strong> is an open-source protein feature visualisation tool used by UniProt, the high-quality, comprehensive, and freely accessible resource of protein sequence and functional information. It is built upon the suite of modular <strong>standard and reusable web components</strong> called Nightingale, a <strong>collaborative open-source</strong> library. It enables integration of protein sequence features, variants, and structural data in a unified viewer. These components ...
1/31/26
Bioinformatics & Computational Biology
Ben Busby
K.4.601
<p>As our tools evolve from scripts and pipelines to intelligent, context-aware systems, the interfaces we use to interact with data are being reimagined.</p> <p>This talk will explore how accelerated and integrated compute is reshaping the landscape of biobank-scale datasets, weaving together genomics, imaging, and phenotypic data with and feeding validatable models. Expect a whirlwind tour through: · Ultra-fast sequence alignment and real-time discretization · Estimating cis/trans effects on ...
1/31/26
Bioinformatics & Computational Biology
Bob Van Hove
K.4.601
<p>Advances in DNA sequencing and synthesis have made reading and writing genetic code faster and cheaper than ever. Yet most labs run experiments at the same scale they did a decade ago, not because the biology is limiting, but because the software hasn't caught up.</p> <p>The conventional digital representation of a genome is a string of nucleotides. This works well enough for simple projects, but the model breaks down as complexity grows. Sequences aren't constant: they evolve, mutate, and ...